{"description": "Transcriptome index for salmon, produced with salmon index", "required_files": [], "required_assets": [{"key": "fasta", "default": "fasta", "description": "fasta asset for transcriptome"}], "required_parameters": [{"key": "threads", "default": "8", "description": "Number of threads to use for parallel computing"}, {"key": "kmer", "default": "31", "description": "The length of kmer to use to create the indices"}], "container": "combinelab/salmon", "assets": {"salmon_index": "."}, "command_list": ["salmon index -t {fasta} -i {asset_outfolder} -k {kmer} -p {threads}"]}