{"description": "Transcript to gene map file, containing two columns mapping of each transcript present in the reference to the corresponding gene.", "required_files": [], "required_assets": [{"key": "salmon_partial_sa_index", "default": "salmon_partial_sa_index", "description": "partial salmon index asset"}], "required_parameters": [], "assets": {"tgMap": "{genome}_txp2gene.tsv"}, "command_list": ["grep '^>' {salmon_partial_sa_index}/gentrome.fa | cut -d ' ' -f 1,7 | tr -s ' ' '\\t' | sed 's/[>'gene_symbol:']//g' > {asset_outfolder}/{genome}_txp2gene.tsv"]}