### Pipeline run code and environment:

*              Command:  `/home/mjs5kd/.local/bin/refgenie build hg19/tgMap`
*         Compute host:  udc-ba36-36
*          Working dir:  /sfs/qumulo/qproject/shefflab/deploy/rg.databio.org_full/rg.databio.org
*            Outfolder:  /project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/tgMap/default/_refgenie_build/
*  Pipeline started at:   (04-17 16:03:00) elapsed: 0.0 _TIME_

### Version log:

*       Python version:  3.6.6
*          Pypiper dir:  `/sfs/qumulo/qhome/mjs5kd/.local/lib/python3.6/site-packages/pypiper`
*      Pypiper version:  0.12.1
*         Pipeline dir:  `/sfs/qumulo/qhome/mjs5kd/.local/bin`
*     Pipeline version:  None

### Arguments passed to pipeline:

* `asset_registry_paths`:  `['hg19/tgMap']`
*             `assets`:  `None`
*            `command`:  `build`
*        `config_file`:  `refgenie.yaml`
*             `docker`:  `False`
*              `files`:  `None`
*             `genome`:  `None`
*      `genome_config`:  `None`
* `genome_description`:  `None`
*             `logdev`:  `False`
*          `new_start`:  `False`
*          `outfolder`:  `/project/shefflab/deploy/rg.databio.org_full/genomes/data`
*             `params`:  `None`
*             `recipe`:  `None`
*            `recover`:  `False`
*       `requirements`:  `False`
*             `silent`:  `False`
*     `skip_read_lock`:  `False`
*    `tag_description`:  `None`
*          `verbosity`:  `None`
*            `volumes`:  `None`

----------------------------------------

Target to produce: `/project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/tgMap/default/_refgenie_build/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c_tgMap__default.flag`  

> `grep '^>' /project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/salmon_partial_sa_index/default/./gentrome.fa | cut -d ' ' -f 1,7 | tr -s ' ' '\t' | sed 's/[>'gene_symbol:']//g' > /project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/tgMap/default/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c_txp2gene.tsv` (8264,8265,8266,8267)
<pre>
</pre>
Command completed. Elapsed time: 0:00:03. Running peak memory: 0.002GB.  
  PID: 8267;	Command: sed;	Return code: 0;	Memory used: 0.002GB  
  PID: 8264;	Command: grep;	Return code: 0;	Memory used: 0.001GB  
  PID: 8266;	Command: tr;	Return code: 0;	Memory used: 0.001GB  
  PID: 8265;	Command: cut;	Return code: 0;	Memory used: 0.001GB


> `touch /project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/tgMap/default/_refgenie_build/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c_tgMap__default.flag` (8272)
<pre>
</pre>
Command completed. Elapsed time: 0:00:00. Running peak memory: 0.002GB.  
  PID: 8272;	Command: touch;	Return code: 0;	Memory used: 0.0GB

Asset digest: 68b03f21ac42e64bbcf48d2ec0ce5312
Default tag for 'baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/tgMap' set to: default

### Pipeline completed. Epilogue
*        Elapsed time (this run):  0:00:03
*  Total elapsed time (all runs):  0:00:11
*         Peak memory (this run):  0.0024 GB
*        Pipeline completed time: 2021-04-17 16:03:03
Finished building 'tgMap' asset
Created alias directories: 
 - /project/shefflab/deploy/rg.databio.org_full/genomes/alias/hg19/tgMap/default