### Pipeline run code and environment:

*              Command:  `/home/mjs5kd/.local/bin/refgenie build hg19/gencode_gtf --files gencode_gtf=/project/shefflab/www/refgenie_refgenomes.databio.org/hg19-gencode_gtf-gencode_gtf`
*         Compute host:  udc-aw34-6c0
*          Working dir:  /sfs/qumulo/qproject/shefflab/deploy/rg.databio.org_full/rg.databio.org
*            Outfolder:  /project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/gencode_gtf/default/_refgenie_build/
*  Pipeline started at:   (04-07 15:34:04) elapsed: 0.0 _TIME_

### Version log:

*       Python version:  3.6.6
*          Pypiper dir:  `/sfs/qumulo/qhome/mjs5kd/.local/lib/python3.6/site-packages/pypiper`
*      Pypiper version:  0.12.1
*         Pipeline dir:  `/sfs/qumulo/qhome/mjs5kd/.local/bin`
*     Pipeline version:  None

### Arguments passed to pipeline:

* `asset_registry_paths`:  `['hg19/gencode_gtf']`
*             `assets`:  `None`
*            `command`:  `build`
*        `config_file`:  `refgenie.yaml`
*             `docker`:  `False`
*              `files`:  `[['gencode_gtf=/project/shefflab/www/refgenie_refgenomes.databio.org/hg19-gencode_gtf-gencode_gtf']]`
*             `genome`:  `None`
*      `genome_config`:  `None`
* `genome_description`:  `None`
*             `logdev`:  `False`
*          `new_start`:  `False`
*          `outfolder`:  `/project/shefflab/deploy/rg.databio.org_full/genomes/data`
*             `params`:  `None`
*             `recipe`:  `None`
*            `recover`:  `False`
*       `requirements`:  `False`
*             `silent`:  `False`
*     `skip_read_lock`:  `False`
*    `tag_description`:  `None`
*          `verbosity`:  `None`
*            `volumes`:  `None`

----------------------------------------

Target to produce: `/project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/gencode_gtf/default/_refgenie_build/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c_gencode_gtf__default.flag`  

> `cp /project/shefflab/www/refgenie_refgenomes.databio.org/hg19-gencode_gtf-gencode_gtf /project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/gencode_gtf/default/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c.gtf.gz` (252665)
<pre>
</pre>
Command completed. Elapsed time: 0:00:01. Running peak memory: 0.002GB.  
  PID: 252665;	Command: cp;	Return code: 0;	Memory used: 0.002GB


> `touch /project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/gencode_gtf/default/_refgenie_build/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c_gencode_gtf__default.flag` (252679)
<pre>
</pre>
Command completed. Elapsed time: 0:00:00. Running peak memory: 0.002GB.  
  PID: 252679;	Command: touch;	Return code: 0;	Memory used: 0.0GB

Asset digest: 3ecbecc25451ce6ae3557a4011510d73
Waiting for file lock: /project/shefflab/deploy/rg.databio.org_full/rg.databio.org/config/lock.refgenie_config.yaml .. File unlocked
Default tag for 'baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/gencode_gtf' set to: default

### Pipeline completed. Epilogue
*        Elapsed time (this run):  0:00:02
*  Total elapsed time (all runs):  0:00:01
*         Peak memory (this run):  0.0018 GB
*        Pipeline completed time: 2021-04-07 15:34:06
Finished building 'gencode_gtf' asset
Created alias directories: 
 - /project/shefflab/deploy/rg.databio.org_full/genomes/alias/hg19/gencode_gtf/default