### Pipeline run code and environment:

*              Command:  `/home/mjs5kd/.local/bin/refgenie build human_rDNA/suffixerator_index`
*         Compute host:  udc-ba25-18
*          Working dir:  /sfs/qumulo/qproject/shefflab/deploy/rg.databio.org_full/rg.databio.org
*            Outfolder:  /project/shefflab/deploy/rg.databio.org_full/genomes/data/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8/suffixerator_index/default/_refgenie_build/
*  Pipeline started at:   (04-07 15:39:40) elapsed: 0.0 _TIME_

### Version log:

*       Python version:  3.6.6
*          Pypiper dir:  `/sfs/qumulo/qhome/mjs5kd/.local/lib/python3.6/site-packages/pypiper`
*      Pypiper version:  0.12.1
*         Pipeline dir:  `/sfs/qumulo/qhome/mjs5kd/.local/bin`
*     Pipeline version:  None

### Arguments passed to pipeline:

* `asset_registry_paths`:  `['human_rDNA/suffixerator_index']`
*             `assets`:  `None`
*            `command`:  `build`
*        `config_file`:  `refgenie.yaml`
*             `docker`:  `False`
*              `files`:  `None`
*             `genome`:  `None`
*      `genome_config`:  `None`
* `genome_description`:  `None`
*             `logdev`:  `False`
*          `new_start`:  `False`
*          `outfolder`:  `/project/shefflab/deploy/rg.databio.org_full/genomes/data`
*             `params`:  `None`
*             `recipe`:  `None`
*            `recover`:  `False`
*       `requirements`:  `False`
*             `silent`:  `False`
*     `skip_read_lock`:  `False`
*    `tag_description`:  `None`
*          `verbosity`:  `None`
*            `volumes`:  `None`

----------------------------------------

Target to produce: `/project/shefflab/deploy/rg.databio.org_full/genomes/data/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8/suffixerator_index/default/_refgenie_build/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8_suffixerator_index__default.flag`  

> `gt suffixerator -dna -pl -tis -suf -lcp -v -showprogress -memlimit 8GB -db /project/shefflab/deploy/rg.databio.org_full/genomes/data/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8/fasta/default/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8.fa -indexname /project/shefflab/deploy/rg.databio.org_full/genomes/data/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8/suffixerator_index/default/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8.sft` (14562)
<pre>
WARNING: Skipping mount /opt/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container
# dna=yes
# indexname="/project/shefflab/deploy/rg.databio.org_full/genomes/data/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8/suffixerator_index/default/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8.sft"
# prefixlength=automatic
# storespecialcodes=false
# inputfile[0]=/project/shefflab/deploy/rg.databio.org_full/genomes/data/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8/fasta/default/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8.fa
# indexname=/project/shefflab/deploy/rg.databio.org_full/genomes/data/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8/suffixerator_index/default/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8.sft
# outtistab=true,outsuftab=true,outlcptab=true,outbwttab=false,outbcktab=false,outdestab=true,outsdstab=true,outssptab=true,outkystab=false
# maximumspace=8192 MB
# maxinsertionsort=3
# maxbltriesort=1000
# maxcountingsort=4000
# lcpdist=false
# sizeof (GtUword)=64
# wildcardranges of length 1=8
# wildcardranges of length 2=1
# wildcardranges of length 3=1
# init character encoding (ushort, 11231 bytes, 2.09 bits/symbol)
# totallength=42999
# numofsequences=1
# specialcharacters=13
# specialranges=10
# realspecialranges=10
# wildcards=13
# wildcardranges=10
# realwildcardranges=10
# occurrences(a)=6411
# occurrences(c)=13605
# occurrences(g)=11491
# occurrences(t)=11479
# automatically determined prefixlength=5
# maxinsertionsort=3
# maxbltriesort=1000
# maxcountingsort=4000
# storespecialcodes=false
# cmpcharbychar=false
# totallength=42999
# sizeof (leftborder)=4100 bytes
# sizeof (countspecialcodes)=1024 bytes
# sizeof (distpfxidx)=336 bytes
# sizeof (bcktab)=5460 bytes
# largest bucket size=998
# derived parts=1
# widthofpart[0]=42986
# create suffix_sort_space: suftab uses 64bit values: maxvalue=42999,numofentries=42986
# used workspace for sorting: 0.11 MB
# countinsertionsort=0
# countbltriesort=290
# countcountingsort=0
# countshortreadsort=734
# countradixsort=0
# counttqsort=0
</pre>
Command completed. Elapsed time: 0:00:03. Running peak memory: 0.015GB.  
  PID: 14562;	Command: gt;	Return code: 0;	Memory used: 0.015GB


> `touch /project/shefflab/deploy/rg.databio.org_full/genomes/data/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8/suffixerator_index/default/_refgenie_build/b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8_suffixerator_index__default.flag` (14660)
<pre>
</pre>
Command completed. Elapsed time: 0:00:00. Running peak memory: 0.015GB.  
  PID: 14660;	Command: touch;	Return code: 0;	Memory used: 0.0GB

Asset digest: 7d59b94db99aabdbed46d55253d9b69e
Default tag for 'b769bcf2deaf9d061d94f2007a0e956249905c64653cb5c8/suffixerator_index' set to: default

### Pipeline completed. Epilogue
*        Elapsed time (this run):  0:00:08
*  Total elapsed time (all runs):  0:00:03
*         Peak memory (this run):  0.0154 GB
*        Pipeline completed time: 2021-04-07 15:39:50
Finished building 'suffixerator_index' asset
Created alias directories: 
 - /project/shefflab/deploy/rg.databio.org_full/genomes/alias/human_rDNA/suffixerator_index/default