### Pipeline run code and environment:

*              Command:  `/home/mjs5kd/.local/bin/refgenie build human_alu/suffixerator_index`
*         Compute host:  udc-ba25-17
*          Working dir:  /sfs/qumulo/qproject/shefflab/deploy/rg.databio.org_full/rg.databio.org
*            Outfolder:  /project/shefflab/deploy/rg.databio.org_full/genomes/data/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46/suffixerator_index/default/_refgenie_build/
*  Pipeline started at:   (04-07 15:39:32) elapsed: 0.0 _TIME_

### Version log:

*       Python version:  3.6.6
*          Pypiper dir:  `/sfs/qumulo/qhome/mjs5kd/.local/lib/python3.6/site-packages/pypiper`
*      Pypiper version:  0.12.1
*         Pipeline dir:  `/sfs/qumulo/qhome/mjs5kd/.local/bin`
*     Pipeline version:  None

### Arguments passed to pipeline:

* `asset_registry_paths`:  `['human_alu/suffixerator_index']`
*             `assets`:  `None`
*            `command`:  `build`
*        `config_file`:  `refgenie.yaml`
*             `docker`:  `False`
*              `files`:  `None`
*             `genome`:  `None`
*      `genome_config`:  `None`
* `genome_description`:  `None`
*             `logdev`:  `False`
*          `new_start`:  `False`
*          `outfolder`:  `/project/shefflab/deploy/rg.databio.org_full/genomes/data`
*             `params`:  `None`
*             `recipe`:  `None`
*            `recover`:  `False`
*       `requirements`:  `False`
*             `silent`:  `False`
*     `skip_read_lock`:  `False`
*    `tag_description`:  `None`
*          `verbosity`:  `None`
*            `volumes`:  `None`

----------------------------------------

Target to produce: `/project/shefflab/deploy/rg.databio.org_full/genomes/data/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46/suffixerator_index/default/_refgenie_build/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46_suffixerator_index__default.flag`  

> `gt suffixerator -dna -pl -tis -suf -lcp -v -showprogress -memlimit 8GB -db /project/shefflab/deploy/rg.databio.org_full/genomes/data/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46/fasta/default/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46.fa -indexname /project/shefflab/deploy/rg.databio.org_full/genomes/data/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46/suffixerator_index/default/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46.sft` (3061)
<pre>
WARNING: Skipping mount /opt/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container
# dna=yes
# indexname="/project/shefflab/deploy/rg.databio.org_full/genomes/data/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46/suffixerator_index/default/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46.sft"
# prefixlength=automatic
# storespecialcodes=false
# inputfile[0]=/project/shefflab/deploy/rg.databio.org_full/genomes/data/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46/fasta/default/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46.fa
# indexname=/project/shefflab/deploy/rg.databio.org_full/genomes/data/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46/suffixerator_index/default/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46.sft
# outtistab=true,outsuftab=true,outlcptab=true,outbwttab=false,outbcktab=false,outdestab=true,outsdstab=true,outssptab=true,outkystab=false
# maximumspace=8192 MB
# maxinsertionsort=3
# maxbltriesort=1000
# maxcountingsort=4000
# lcpdist=false
# sizeof (GtUword)=64
# init character encoding (uchar, 1015 bytes, 3.49 bits/symbol)
# init ssptab encoding (ushort, 22 bytes, 0.08 bits/symbol)
# totallength=2328
# numofsequences=8
# specialcharacters=7
# specialranges=7
# realspecialranges=7
# wildcards=0
# wildcardranges=0
# realwildcardranges=0
# occurrences(a)=558
# occurrences(c)=640
# occurrences(g)=772
# occurrences(t)=351
# automatically determined prefixlength=3
# maxinsertionsort=3
# maxbltriesort=1000
# maxcountingsort=4000
# storespecialcodes=false
# cmpcharbychar=false
# totallength=2328
# sizeof (leftborder)=260 bytes
# sizeof (countspecialcodes)=64 bytes
# sizeof (distpfxidx)=16 bytes
# sizeof (bcktab)=340 bytes
# largest bucket size=111
# derived parts=1
# widthofpart[0]=2321
# create suffix_sort_space: suftab uses 64bit values: maxvalue=2328,numofentries=2321
# used workspace for sorting: 0.11 MB
# countinsertionsort=0
# countbltriesort=0
# countcountingsort=0
# countshortreadsort=63
# countradixsort=0
# counttqsort=0
</pre>
Command completed. Elapsed time: 0:00:10. Running peak memory: 0.029GB.  
  PID: 3061;	Command: gt;	Return code: 0;	Memory used: 0.029GB


> `touch /project/shefflab/deploy/rg.databio.org_full/genomes/data/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46/suffixerator_index/default/_refgenie_build/74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46_suffixerator_index__default.flag` (3168)
<pre>
</pre>
Command completed. Elapsed time: 0:00:01. Running peak memory: 0.029GB.  
  PID: 3168;	Command: touch;	Return code: 0;	Memory used: 0.001GB

Asset digest: 440f0b31b44f91d9d16b16eb507957b9
Default tag for '74a50bdcb018c11d17d94d44679da3cbb3cb420df0ab1e46/suffixerator_index' set to: default

### Pipeline completed. Epilogue
*        Elapsed time (this run):  0:00:13
*  Total elapsed time (all runs):  0:00:10
*         Peak memory (this run):  0.029 GB
*        Pipeline completed time: 2021-04-07 15:39:45
Finished building 'suffixerator_index' asset
Created alias directories: 
 - /project/shefflab/deploy/rg.databio.org_full/genomes/alias/human_alu/suffixerator_index/default