{"description": "Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate", "required_files": [], "required_assets": [{"key": "fasta", "default": "fasta", "description": "fasta asset for genome"}], "required_parameters": [{"key": "threads", "default": "8", "description": "Number of threads to use for parallel computing"}], "container": "databio/refgenie", "assets": {"star_index": "."}, "command_list": ["mkdir -p {asset_outfolder}", "STAR --runThreadN {threads} --runMode genomeGenerate --genomeDir {asset_outfolder} --genomeFastaFiles {fasta}"]}