{"description": "DNA sequences in the FASTA format, indexed FASTA (produced with samtools index) and chromosome sizes file", "assets": {"fasta": "{genome}.fa", "fai": "{genome}.fa.fai", "chrom_sizes": "{genome}.chrom.sizes"}, "required_files": [{"key": "fasta", "description": "gzipped fasta file"}], "required_assets": [], "required_parameters": [], "container": "databio/refgenie", "command_list": ["cp {fasta} {asset_outfolder}/{genome}.fa.gz", "gzip -df {asset_outfolder}/{genome}.fa.gz", "samtools faidx {asset_outfolder}/{genome}.fa", "cut -f 1,2 {asset_outfolder}/{genome}.fa.fai > {asset_outfolder}/{genome}.chrom.sizes"]}