{"description": "A database developed for functional prediction and annotation of all potential non-synonymous single-nucleotide variants (nsSNVs) in the human genome (Gencode release 29/Ensembl 94)", "assets": {"dbnsfp": "{genome}_dbNSFP.txt.gz", "tabix": "{genome}_dbNSFP.txt.gz.tbi"}, "required_files": [{"key": "dbnsfp", "description": "zipped dbNSFP database file"}], "required_assets": [], "required_parameters": [{"key": "threads", "default": "8", "description": "Number of threads to use for parallel computing"}], "container": "databio/refgenie", "command_list": ["cp {dbnsfp} {asset_outfolder}/{genome}.zip", "unzip {asset_outfolder}/{genome}.zip -d {asset_outfolder}", "gunzip -v {asset_outfolder}/*variant.chr*.gz", "head -n1 {asset_outfolder}/dbNSFP*_variant.chr1 > {asset_outfolder}/{genome}_dbNSFP.txt", "cat {asset_outfolder}/dbNSFP*variant.chr* | grep -v '#' >> {asset_outfolder}/{genome}_dbNSFP.txt", "rm {asset_outfolder}/dbNSFP*_variant.chr*", "bgzip -@ {threads} {asset_outfolder}/{genome}_dbNSFP.txt", "tabix -s 1 -b 2 -e 2 {asset_outfolder}/{genome}_dbNSFP.txt.gz", "rm `find {asset_outfolder} -type f -not -path '{asset_outfolder}/_refgenie_build*' -not -path '{asset_outfolder}/{genome}_dbNSFP.txt.*'`"]}