### Pipeline run code and environment:
* Command: `/home/mjs5kd/.local/bin/refgenie build hg38/dbnsfp --files dbnsfp=/project/shefflab/www/refgenie_refgenomes.databio.org/hg38-dbnsfp-dbnsfp`
* Compute host: udc-ba25-17
* Working dir: /sfs/qumulo/qproject/shefflab/deploy/rg.databio.org_full/rg.databio.org
* Outfolder: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/_refgenie_build/
* Pipeline started at: (04-08 20:43:22) elapsed: 0.0 _TIME_
### Version log:
* Python version: 3.6.6
* Pypiper dir: `/sfs/qumulo/qhome/mjs5kd/.local/lib/python3.6/site-packages/pypiper`
* Pypiper version: 0.12.1
* Pipeline dir: `/sfs/qumulo/qhome/mjs5kd/.local/bin`
* Pipeline version: None
### Arguments passed to pipeline:
* `asset_registry_paths`: `['hg38/dbnsfp']`
* `assets`: `None`
* `command`: `build`
* `config_file`: `refgenie.yaml`
* `docker`: `False`
* `files`: `[['dbnsfp=/project/shefflab/www/refgenie_refgenomes.databio.org/hg38-dbnsfp-dbnsfp']]`
* `genome`: `None`
* `genome_config`: `None`
* `genome_description`: `None`
* `logdev`: `False`
* `new_start`: `False`
* `outfolder`: `/project/shefflab/deploy/rg.databio.org_full/genomes/data`
* `params`: `None`
* `recipe`: `None`
* `recover`: `False`
* `requirements`: `False`
* `silent`: `False`
* `skip_read_lock`: `False`
* `tag_description`: `None`
* `verbosity`: `None`
* `volumes`: `None`
----------------------------------------
Target to produce: `/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/_refgenie_build/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4_dbnsfp__default.flag`
> `cp /project/shefflab/www/refgenie_refgenomes.databio.org/hg38-dbnsfp-dbnsfp /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4.zip` (14612)
Command completed. Elapsed time: 0:01:36. Running peak memory: 0.002GB.
PID: 14612; Command: cp; Return code: 0; Memory used: 0.002GB
> `unzip /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4.zip -d /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default` (14832)
Archive: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4.zip
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c.readme.txt
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr1.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr10.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr11.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr12.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr13.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr14.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr15.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr16.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr17.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr18.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr19.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr2.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr20.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr21.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr22.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr3.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr4.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr5.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr6.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr7.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr8.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr9.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chrM.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chrX.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chrY.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0_gene.complete.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0_gene.gz
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/LICENSE.txt
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/search_dbNSFP40c.class
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/search_dbNSFP40c.java
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/search_dbNSFP40c.readme.pdf
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/try.vcf
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/tryhg18.in
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/tryhg19.in
extracting: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/tryhg38.in
Command completed. Elapsed time: 0:04:49. Running peak memory: 0.002GB.
PID: 14832; Command: unzip; Return code: 0; Memory used: 0.002GB
> `gunzip -v /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/*variant.chr*.gz` (15753)
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr10.gz: 86.4% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr10
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr11.gz: 86.3% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr11
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr12.gz: 86.4% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr12
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr13.gz: 86.1% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr13
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr14.gz: 86.4% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr14
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr15.gz: 86.3% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr15
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr16.gz: 86.1% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr16
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr17.gz: 86.4% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr17
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr18.gz: 86.4% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr18
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr19.gz: 86.1% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr19
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr1.gz: 86.2% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr1
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr20.gz: 86.0% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr20
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr21.gz: 86.3% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr21
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr22.gz: 86.1% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr22
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr2.gz: 86.4% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr2
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr3.gz: 86.4% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr3
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr4.gz: 86.3% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr4
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr5.gz: 86.1% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr5
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr6.gz: 86.2% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr6
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr7.gz: 86.3% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr7
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr8.gz: 86.3% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr8
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr9.gz: 86.2% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chr9
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chrM.gz: 93.0% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chrM
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chrX.gz: 87.8% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chrX
/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chrY.gz: 90.2% -- replaced with /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP4.0c_variant.chrY
Command completed. Elapsed time: 0:24:00. Running peak memory: 0.002GB.
PID: 15753; Command: gunzip; Return code: 0; Memory used: 0.001GB
> `head -n1 /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP*_variant.chr1 > /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4_dbNSFP.txt` (20908)
Command completed. Elapsed time: 0:00:00. Running peak memory: 0.002GB.
PID: 20908; Command: head; Return code: 0; Memory used: 0.001GB
> `cat /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP*variant.chr* | grep -v '#' >> /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4_dbNSFP.txt` (20910,20911)
Command completed. Elapsed time: 0:27:54. Running peak memory: 0.003GB.
PID: 20910; Command: cat; Return code: 0; Memory used: 0.002GB
PID: 20911; Command: grep; Return code: 0; Memory used: 0.003GB
> `rm /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/dbNSFP*_variant.chr*` (26594)
Command completed. Elapsed time: 0:00:07. Running peak memory: 0.003GB.
PID: 26594; Command: rm; Return code: 0; Memory used: 0.001GB
> `bgzip -@ 8 /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4_dbNSFP.txt` (26639)
[33mWARNING:[0m Skipping mount /opt/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container
Command completed. Elapsed time: 2:30:12. Running peak memory: 0.025GB.
PID: 26639; Command: bgzip; Return code: 0; Memory used: 0.025GB
> `tabix -s 1 -b 2 -e 2 /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4_dbNSFP.txt.gz` (23681)
[33mWARNING:[0m Skipping mount /opt/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container
Command completed. Elapsed time: 0:34:08. Running peak memory: 0.026GB.
PID: 23681; Command: tabix; Return code: 0; Memory used: 0.026GB
> `rm `find /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default -type f -not -path '/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/_refgenie_build*' -not -path '/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4_dbNSFP.txt.*'`` (30256)
Command completed. Elapsed time: 0:00:01. Running peak memory: 0.026GB.
PID: 30256; Command: rm; Return code: 0; Memory used: 0.003GB
> `touch /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp/default/_refgenie_build/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4_dbnsfp__default.flag` (30259)
Command completed. Elapsed time: 0:00:00. Running peak memory: 0.026GB.
PID: 30259; Command: touch; Return code: 0; Memory used: 0.001GB
Asset digest: f9a65727a9731ad4adfd8504c2b99587
Default tag for '2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbnsfp' set to: default
### Pipeline completed. Epilogue
* Elapsed time (this run): 4:03:34
* Total elapsed time (all runs): 4:30:32
* Peak memory (this run): 0.0265 GB
* Pipeline completed time: 2021-04-09 00:46:57
Finished building 'dbnsfp' asset
Created alias directories:
- /project/shefflab/deploy/rg.databio.org_full/genomes/alias/hg38/dbnsfp/default